Pairwise Protein sequence alignment for MFDSGN vs SMFID usin

Pairwise Protein sequence alignment for MFDSGN v.s. SMFID using local sequence alignment (Smith & Waterman) Scoring system Match = +5 Mismatch = -1 Gap = -1 Matrix F(i, j) = max {F(i - 1, j - 1) + S(x_j. y_j) F(i - 1, j) + s F(i, j - 1) + s

Solution

######################################## # Program: water # Rundate: Tue 7 Feb 2017 15:46:10 # Commandline: water # -auto # -stdout # -asequence emboss_water-E20170207-154609-0395-86570807-es.asequence # -bsequence emboss_water-E20170207-154609-0395-86570807-es.bsequence # -datafile EBLOSUM62 # -gapopen 10.0 # -gapextend 0.5 # -aformat3 pair # -sprotein1 # -sprotein2 # Align_format: pair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: EMBOSS_001 # 2: EMBOSS_001 # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 Length: 2 Identity: 2/2 (100.0%) Similarity: 2/2 (100.0%) Gaps: 0/2 ( 0.0%) Score: 11.0 EMBOSS_001 1 MF 2 || EMBOSS_001 2 MF 3